LiteQTL.jl

This package enables near real-time computation of whole genome eQTL scans. The exact times will depend on the size of the dataset. We were able to run eQTL scans for 35K spleen mRNA traits in the BXD population in under a second. The package was developed for web backends and can be used independently as a Julia package. If a Nvdia GPU is available further acceleration is possible.

LiteQTL.jl source code